PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G282200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 263aa    MW: 27185.7 Da    PI: 6.8581
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G282200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.52.9e-40341341100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l
  Seita.9G282200.1.p  34 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPPHKRLDAVVTVCYEAQARLRDPIYGCVSHIFALQQQVVNL 124
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael +l+ +
  Seita.9G282200.1.p 125 QAELTYLQGH 134
                         ****998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.37633135IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3934132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSSVAGASA GGGAGGLGGG GGAGAGAGIG GGGPCGACKF LRRKCVSGCI FAPYFDSEQG  60
AAHFAAVHKV FGASNVSKLL LQIPPHKRLD AVVTVCYEAQ ARLRDPIYGC VSHIFALQQQ  120
VVNLQAELTY LQGHLTTMEL PTPPPFAPQP QPPMPTNAAF SVSNLPLSSS VPATVDLSTL  180
LDPHNQSQQW AFQFQQQQVL QQQQQLLQQQ QYMQMGEGSS RVAGGSSTAD GGDLQALARE  240
LLDRHGMVAA GSPPEPPTPA IQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0614311e-124BT061431.1 Zea mays full-length cDNA clone ZM_BFb0145J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986691.10.0PREDICTED: LOB domain-containing protein 18-like
SwissprotO221314e-71LBD18_ARATH; LOB domain-containing protein 18
TrEMBLC5WNA01e-95C5WNA0_SORBI; Putative uncharacterized protein Sb01g024400
STRINGSb01g024400.13e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-62LOB domain-containing protein 18